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Salinity Processes in the Upper Ocean Regional Study (SPURS): One Word

September 14th, 2016 by Maria-Jose Viñas

By Eric Lindstrom

Plastic bottle floating by the ship.

Plastic bottle floating by the ship.

A 1960’s movie classic, “The Graduate” (1967), contains a scene where the young Benjamin Braddock (Dustin Hoffman) is given advice about his future by the worldly Mr. McGuire (Walter Brooke):

Mr. McGuire: I want to say one word to you. Just one word.

Benjamin: Yes, sir.

Mr. McGuire: Are you listening?

Benjamin: Yes, I am.

Mr. McGuire: Plastics.

A report from the World Economic Forum earlier this year estimates that the weight of plastic in the ocean will equal the weigh of fish by 2050. According to the report the worldwide use of plastic has increased 20-fold in the past 50 years and is expected to double again in the next 20 years.

Ocean pollution by plastic has been worrisome for years, but the global prevalence of plastic in the ocean and the full impact of its consequences are more recently appreciated. Plastic breaks down at sea into “microplastics” that are now part of the floating plankton – the base of the food web in the ocean. So, plastic is increasingly found in the stomachs of marine organisms. Recent estimates put the amount of plastic floating in the world’s oceans at more than 5.25 trillion pieces weighing more than 268,000 metric tons. That translates to as much as 100,000 pieces per square kilometer in some areas of the ocean. This is a new ocean habitat know as the plastisphere.

The plastisphere is a new waterfront mobile home for marine microorganisms. It potentially provides a floating home for microbes to take long tours of the ocean that were heretofore impossible. The ecological implications of this new globalization of the ocean microbial biota have yet to be determined.

Zooplankton and fish consume microplastics as they forage the plankton. Scientists think that nearly every bird that feeds at sea has a burden from the plastisphere as they forage the small fish. Given the rapidly increasing tonnage of plastic joining the plastisphere and the plastisphere invasion of the marine food chain, we too will be doing battle with the plastisphere, if not already.

Marine debris is not all plastic and has many sources. However, dumping from ships at sea is NOT the major source. Dumping at sea has been highly regulated for more than 30 years. The major source of plastics and other debris in the ocean is from land sources and river runoff.

Dan Clark with two of his nearly 50 bottles of samples for investigation of ocean microplastics.

Dan Clark with two of his nearly 50 bottles of samples for investigation of ocean microplastics.

In SPURS-2 we are very far from land – 7.5 days transit by ship from the Hawaiian Islands. Yet, still, we spy plastic bottles, shoes, fishing gear, and other unidentifiable debris at the surface of the ocean every day. We also have evidence that microplastics exist here. A UV filter, part of the water intake to one of R/V Revelle’s new thermosalinograph systems (Underway Salinity Profiling System) inadvertently acts as a microplastics sampler. Floating plastics, fibers and ocean detritus accumulate in the UV filter chamber that used to sterilize the saltwater sample prior to salinity sensing. The debris in the filter must be cleaned frequently to keep the system in working order and prevent bioaccumulation in salinity sensor. This thermosalinograph system was not designed for studying ocean debris, but it is a plenty worrisome observation. Dan Clark from University of Washington’s Applied Physics Laboratory is keeping the daily samples for analysis after SPURS-2. This a nice example of citizen science undertaken through the curiosity and personal initiative of Dan over and above his many other duties. Now he just has to figure out how to deal with the unusual sampling protocol!

The ocean is actually quite forgiving as a disposal site for human detritus in moderation, except plastic. Organics can be recycled by marine life, wood is disposed of quickly by boring worms, metals can be corroded by seawater, but plastic cannot be dissolved or digested. It is only humans who create and produce plastic goods. It is only humans who can dispose of plastic properly. Plastic MUST be recycled or disposed in landfills. Plastic has no business being in the ocean. We can only hope that the plastisphere we have created can be tamed and that it does not spawn deadly new microbes by virtue of its existence.

So, next time you are using a plastic good, make sure its afterlife is not in the plastisphere of the ocean. Benjamin’s retort to Mr. McGuire should have been “Yes. Mr. McGuire. Plastics are the future. If we can find proper ways to dispose of them!”

Salinity Processes in the Upper Ocean Regional Study (SPURS): Salinity Processes in the Upper-Ocean Regional Study: Part Two!

August 10th, 2016 by Eric Lindstrom
The R/V Revelle.

The R/V Revelle.

By Eric Lindstrom

I am writing this while on a plane headed toward Honolulu to join the Research Vessel (R/V) Roger Revelle for six weeks at sea in the Pacific Ocean. It feels great to be heading to sea again. This NASA field campaign will last more than a year, with intense shipboard work near the beginning and end of the year. A web of sensors will be deployed to monitor one oceanic region over an entire year.

As Physical Oceanography Program Scientist at NASA Headquarters for nearly 20 years, my primary job is supporting our satellite missions related to measuring physical characteristics of the ocean (principally, temperature, salinity, sea level, and winds) and supporting the oceanographers that generate knowledge from such data. True understanding requires our fully appreciating the variations of the satellite data in the context of ocean physics. And that requires getting out there and getting wet from time to time!

Your blogger, Eric Lindstrom.

Your blogger, Eric Lindstrom.

R/V Revelle (home port: Scripps Institution of Oceanography, San Diego, California) leaves Honolulu on 13 August 2016 and returns to Honolulu on 23 September. The central location of the field work is about 8 days voyage southwest of Hawaii at 10N, 125W. Details of the expedition plans are available here. I hope to bring you a steady stream of expedition blog posts between now and the end of September 2016, including why NASA is focusing attention on this particular spot in the open ocean.

Since NASA’s launch in June 2011 of the Aquarius instrument to measure ocean surface salinity from space, the agency has embarked on field campaigns to understand surface salinity in great detail. This work has illuminated new ways of thinking about the ocean’s role in the global water cycle. Our field campaign, dubbed Salinity Processes in the Upper Ocean Regional Study-2 or SPURS-2, is the latest work to link the remote sensing of salinity with all the oceanic and atmospheric processes that control its variation.

The ocean is the primary source of moisture for the atmosphere. Evaporation of water from the sea surface leaves the ocean saltier (more saline). Precipitation over the ocean leaves the ocean fresher (less saline). The global pattern of average salinity at the sea surface approximately represents the balance of evaporation and precipitation at any locale (other factors such as river runoff, ice melt, and ocean motion and mixing complicate the picture). Many details of the interaction between ocean and atmosphere that lead to moisture transfer and signatures in ocean salinity are poorly understood.  SPURS-2 is particularly focused on how, in one of the rainiest places on Earth, rainwater enters and impacts the ocean. Through this blog during the coming month, you will hear more about how and why oceanographers focus on such a problem.

The first SPURS campaign, which took place in the North Atlantic Ocean in 2012-2013, focused on the study of ocean processes where evaporation dominates the salinity of the surface ocean. I blogged during the September 2012 work from R/V Knorr. Among other things, we learned that surface salinity variations in that part of the world can be directly connected with precipitation patterns over the nearby continents. I’ll discuss that scientific finding and others in this blog over the coming month.

At the opposite extreme from SPURS-1, SPURS-2 focuses on an oceanic regime where precipitation dominates the salinity characteristics of the surface ocean. The two extremes call for significantly different approaches to measuring and studying the upper ocean. We will uses many of the same tools from SPURS-1 (instrumented moorings, profiling floats, surface drifters, and gliders) but deployed in new and novel ways.

The crew and scientific party on R/V Revelle will be more than 50 in all. As you read future blog entries you will get some sense of what its like for such a group to work closely together for six weeks in the confined space of an oceanographic research vessel. Seasickness? Food? Watches? Sleep? Drama? Boredom? Sea life? You’ll find out soon and get a sense of how some oceanographers go about their work, what technologies are involved, what is discovered, and how all this impacts lives, including yours, and what you might experience if you were aboard.

Ship-Aircraft Bio-Optical Research (SABOR): Video “Games” for Science

August 19th, 2014 by Carlos Carrizo, The City College of New York


Update:
The R/V Endeavor returned from sea on Aug. 6, concluding the fieldwork component of the 2014 SABOR experiment.

As mentioned in the previous blog (“A Vast Ocean Teeming with Life”) ending this cruise is not an easy thing to do. Especially if you experienced the majesty of the crystalline blue water in the open ocean as well as the magnificence of the wildlife surrounding it for the very first time. I am currently coursing my third year as a PhD student in the Electrical Engineering Department of The City College of New York (CCNY). I work as a research assistant for a small department in the Optical Remote Sensing Lab called Coastal and Oceanic waters group. We may look like a group of cool guys going out for fishing (as it seems on the left side of the picture), however, we are a team who works hand to hand together (depicted on the right side of the picture … why does the right side always seem right?)

"Cool guys” aka Coastal and Oceanic waters group, members of the ORS Lab at The City College of New York (CCNY). Courtesy of Lynne Butler

“Cool guys” aka Coastal and Oceanic waters group, members of the ORS Lab at The City College of New York (CCNY). Courtesy of Lynne Butler

My research consists of using polarization properties developed as the light field propagates through the water body and use this information to characterize and retrieve water constituents and inherent optical properties (also called IOP’s) from polarimetric measurements. The basic idea is that as light propagates through the water it experiences significant attenuation due to absorption by water and suspended/dissolved matter as well as scattering by water and suspended particulates. These effects, both absorption and scattering, result in signal degradation of the radiance captured by sensors in our instruments. The additional information obtained when using polarization properties of underwater light propagation can provide a better understanding of this propagation and methods for improving image quality and increase underwater visibility … wait! (at this point you may be asking yourself).

So how can this have a real contribution to the goals and objectives pursuit by the SABOR (Ship-Aircraft Bio-Optical Research Campaign) cruise? Well, the answer could be very simple. The ocean is too big and in-situ measurements are too expensive to cover the entire water mass on Earth. Having this in mind, it is very clear that we need to adopt another cost-effective approach and that is the reason why we use satellite observations to account for many changes that take place in the ocean and coastal waters. Satellites provide very useful information when properly calibrated. As you may already know, sensors deteriorate over time and satellites go out of commission. However, polarization features are preserved even when the sensors may have experienced normal degradation and knowledge of this features can contribute in the development of future technologies to be used in satellites when more accurate and reliable information is to be acquired. Some living and manmade objects in water have partially polarized surfaces, whose properties can be advantageous in the context of target camouflage or, conversely, for easier detection. Such is the case for underwater polarimetric images taken to detect harmful algal blooms (red tides) or to assess the health of marine life and coral reefs which are of significant scientific and technical interest.

The main challenge faced by these images is that of improving (increasing) the visibility for ecosystems near and beyond the mesophotic depth zone. Data collected in the form of images, videos and radiance was acquired using a green-band full-Stokes polarimetric video camera and measurements of each Stokes vector components were collected as a function of the Sun’s azimuth angles. These measurements are then compared with satellite observations and model using a radiative transfer code for the atmosphere-ocean system combined with the simple imaging algorithm. The main purpose of this task is to validate satellite observations and develop algorithms that improve and correct these observations when needed.

But seriously… Are you playing video games? Courtesy of Lynne Butler and Ivona Cetinic

But seriously… Are you playing video games? Courtesy of Lynne Butler and Ivona Cetinic

It always looks like I am playing video games but in order to have very accurate information it is advisable to position the instrument at a certain orientation with respect to the Sun’s azimuth angle. The instrument depicted here is called Polarimeter and as Robert Foster suggested in his blog it has a very boring name, so we are still in search of a cool code name after someone suggested (unsuccessfully, and I am glad for this) to call this instrument Carlos. A real issue came across when they were thinking to put Carlos in the water … an idea that I didn’t share. The polarimeter, let’s forget about Carlos for a moment, is a set of Hyperspectral Radiance sensors with polarizers oriented in the vertical, horizontal and 45° from a reference axis. This sensors can capture light coming from any point in the water body thanks to a combination of a step motor which can be programed to stop in any sequence of angles in the range of 0 – 360° (from vertically up to vertically down) and a pair of thrusters (or propellers) which can rotate in the azimuthal direction (both clockwise and counter-clockwise). This scenario allows for vitually a 3-D range of hyperspectral measurements. Pretty cool, huh? The set of bouys at each corner allows us to have a very stable system and prevent the instrument from going very deep down in the case that cables and safety line get cut.

When things go like they do in the left image, we always have to do  the right thing. Courtesy of crew members and Ivona Cetinic

When things go like they do in the left image, we always have to do the right thing. Courtesy of crew members and Ivona Cetinic

Very far from what most of us have probably experienced in a cruise or fishing trip, the ocean is not always calm. In our twenty plus days in the ship, we came across a system which was playing very rough against the R/V Endeavor. Fortunately for us, this cruise was under the supervision of very talented and experienced people. I am not talking only about the captain, but also his outstanding crew members, chief scientist and marine technician. Although we have some minor difficulties (… you should know by now that sea water and electronics will never be good friends) we fixed them as soon as the storm was gone. It is not that Robert and I are playing as firefighters rescuing a dispaired kitten from a tall tree.

I want to end my vision of this field campaign with a summary of the awesome marine wildlife that somehow approach to us to say hello, some species more shy than others, to this group of scientists which were part of NASA-SABOR. As depicted in the picture (left-to-right and top-to-bottom), one of the first appearences was that of a seagull. It doesn’t look that shy since it preferred posing for us on top of the Polarimetric Lidar (owned and operated by scientist from NRL). Very intelligent creature this particular one, the others were just swimming in the waters and preparing to be a snack for a hungry shark as depicted in the image in the top center. Another interesting character which showed up near the surface was previously mentioned by Matthew Brown from Oregon State University in the previous blog post and it was a species of blueish salp with very long tentacles. The next creature is a very friendly dolphin which pretended racing us so we could take very amazing pictures. Dolphins always so adorable, appearing in pods and jumping out of the water around the research vessel or just posing underwater in front of the polarimeter! The last living character was a very shy sperm whale. Always keeping the distance but letting us know it was present leaping out of the water at most 300 feet from the ship!

Wildlife in action. Courtesy of crew members, Courtney Kearney and Ivona Cetinic

Wildlife in action. Courtesy of crew members, Courtney Kearney and Ivona Cetinic

These past three weeks in the R/V Endeavor had been very amazing although intense. Waking up and knowing that you are far from home, your friends and family may sound questionable but understanding that you are in front of one the most wonderful and powerful sources of life is a priceless experience not all of us can witness. That is why I am writting this blog and I hope you have enjoyed reading all our blogs and could have a taste of what is like being in the sea for three weeks!

Ship-Aircraft Bio-Optical Research (SABOR): A Vast Ocean Teeming with Life

August 14th, 2014 by Matthew Brown, Oregon State University

August 5, 2014

Three weeks at sea is a long time for someone who has never been out of sight of shore. My greatest impression during my time out here is the one I first had when we first set out: the ocean is really, really big! I realize that probably sounds too obvious to be worth mentioning, but the sheer vastness of the ocean is hard to overstate. Standing on the deck, turning 360 degrees and seeing nothing but smooth, blue water as far as the horizon, it’s hard not to be struck by how empty it all appears.

The SABOR science party on the deck of the R/V Endeavor. Front row: Wayne Slade (Sequoia Scientific), Deric Gray (Naval Research Laboratory); second row: Kimberly Halsey (Oregon State University), Alex Gilerson (City College of New York), Nicole Poulton (Bigelow Laboratory for Ocean Sciences), Matthew Brown (Oregon State University), Lynne Butler (University of Rhode Island), Nerissa Fisher (Oregon State University), Ali Chase (University of Maine), Nicole Stockley (WET Labs), Robert Foster (The City College of New York), Coutrney Kearney (Naval Research Laboratory); back row: Carlos Carrizo (City College of New York), Allen Milligan (Oregon State University), Jason Graff (Oregon State University), Ivona Cetinić (University of Maine). Credit: NASA SABOR/Wayne Slade, Sequoia Scientific

The SABOR science party on the deck of the R/V Endeavor. Front row: Wayne Slade (Sequoia Scientific), Deric Gray (Naval Research Laboratory); second row: Kimberly Halsey (Oregon State University), Alex Gilerson (City College of New York), Nicole Poulton (Bigelow Laboratory for Ocean Sciences), Matthew Brown (Oregon State University), Lynne Butler (University of Rhode Island), Nerissa Fisher (Oregon State University), Ali Chase (University of Maine), Nicole Stockley (WET Labs), Robert Foster (The City College of New York), Coutrney Kearney (Naval Research Laboratory); back row: Carlos Carrizo (City College of New York), Allen Milligan (Oregon State University), Jason Graff (Oregon State University), Ivona Cetinić (University of Maine). Credit: NASA SABOR/Wayne Slade, Sequoia Scientific

Of course, that’s not true at all. The ocean, far from being empty, is teeming with life. Most of it is too small for us to see with the naked eye, but it’s there all the same and it affects each and every one of us even if we’ve never been to the sea in our lives. Phytoplankton, the microscopic algae that live in the sunlit regions of the ocean, not only provide much of the oxygen we breath, they also play an important role in managing the earth’s climate through their roles in uptaking CO2 from the atmosphere and cycling nutrients like nitrogen and sulfur through the ecosystem.

A big part of what our group does is trying to understand how different aspects of the ocean environment (light, nutrients, grazing pressure) affect the ability of the phytoplankton to photosynthesize and grow. One way we do this is through a piece of equipment called a fluorometer, which can give us an indication of how efficiently algae are absorbing photons from the sun and turning their energy into carbon. It works by hitting them with a large amount of light, then measuring what percentage gets released back after getting absorbed. A simple enough technique in principle but one that can tell us all sorts of things, from the size of the molecular antennas the algae use to harvest light to the degree that electrons can be shared between different reaction centers in the chloroplast.

Another technique we use which is pretty cool (or rather, hot) is the use of radioactive isotope as tracers to measure carbon uptake. On the Endeavor that activity takes place in the Rad Van, which is named for radiation and not, unfortunately, for how radical it is. By allowing algae to photosynthesize in the presence of CO2 formed with the carbon isotope 14C, we are able to track how much the carbon is taken up under a variety of different conditions.

Well, three weeks have come and gone and we put into port tomorrow. It will be nice to be back on land, but I will miss the excitement of the ocean. Today, we got a going away surprise in the form of a pod of dolphins that came near our boat and splashed around for awhile. In addition, the water around the ship was filled with a species of salp, gelatinous creatures which kind of look like sea jellies, that was bioluminescent and gave off a brilliant blue light. It was almost like the ocean knew we were leaving and decided to give us a show to send us off.

Ship-Aircraft Bio-Optical Research (SABOR): Deep Blue Water and a Roller Coaster Ride

July 29th, 2014 by Ali Chase

After just over a full week at sea, we have found the rhythm of our life and work routines. We collect water with the CTD rosette, deploy instruments over the side of the ship, work in the lab, eat, and sleep. That might sound like a lot of work and no play, but we do manage to have fun while we work (think lab dance party while filtering water samples). We’ve also taken time to observe the vast blue around us from the upper deck of the ship, where we recently watched a gorgeous sunset. No green flash sightings yet but I continue to hold out, hoping to see this optical phenomenon – a green flash of light that can sometimes be seen just before the sun disappears below the horizon.

Left: View of the sunset from the top deck. Right: Deck operations just after sunset, which includes deploying two instrument packages that measure a variety of optical parameters, and the CTD rosette, which collects water samples from different depths. Credit: Ali Chase

Left: View of the sunset from the top deck. Right: Deck operations just after sunset, which includes deploying two instrument packages that measure a variety of optical parameters, and the CTD rosette, which collects water samples from different depths. Credit: Ali Chase

Several days ago we crossed into the Sargasso Sea, which is an area of very clear blue water due to low amounts of phytoplankton and dissolved matter which absorb light and make the water in some areas, such as coastal regions, a greener color. But here the water is an amazing deep blue color, which is the color of ocean water when there is not much there besides the water itself. One life form that is prevalent is a seaweed called Sargassum, which we frequently see floating by.

The very blue water of the Sargasso Sea, with a few floating pieces of Sargassum. Each piece is roughly the size of dinner plate, for scale. Credit: Ali Chase

The very blue water of the Sargasso Sea, with a few floating pieces of Sargassum. Each piece is roughly the size of dinner plate, for scale. Credit: Ali Chase

Speaking of things that absorb light in the ocean, much of the work we do in the “wet lab” is related to the absorption and scattering of light by different particles in the ocean. This optical oceanography work allows us to measure the way light interacts with particles, in particular phytoplankton, which absorb and scatter light differently depending on the types and amounts of phytoplankton present. Throughout this cruise we are collecting water continuously using a system involving a boom that extends over the side of the ship with a hose hanging from it into the water. A pump on deck constantly brings water from approximately three meters depth through the hose and into the wet lab, where it then flows through several instruments and provides us with constant information about the optical properties of whatever is in the water.

But, the ocean is a massive place, something that we are very much reminded of while working at sea with no land to be seen in any direction. Even sampling the water continuously during this three-week trip will just give us a small snap shot of ocean conditions. This is where satellites come into play, as they can provide a much broader spatial view of the world’s oceans. However, work in the field is necessary to “ground-truth” what the satellites tell us, to be sure that such expansive information can be accurately related to what is present in the ocean. During this research cruise we will pass through several types of water, such as the warm/salty/fewer phytoplankton water like we see here in the Sargasso Sea, versus cooler/nutrient rich/lots of phytoplankton water in coastal areas such as the Gulf of Maine. Understanding the differences between these regions can be useful for interpreting satellite information about phytoplankton and their role in the earth’s carbon cycle.

Left: The flow-through intake system; the hose hanging from the end of the black boom sucks up water continuously using the pump located in the black box on deck. Right: The wet lab in all its glory – the tubing with the water pumped from outside can be seen running up near the ceiling; it then flows through several instruments positioned both in the sink and on the bench top. Credit: Ali Chase

Left: The flow-through intake system; the hose hanging from the end of the black boom sucks up water continuously using the pump located in the black box on deck. Right: The wet lab in all its glory – the tubing with the water pumped from outside can be seen running up near the ceiling; it then flows through several instruments positioned both in the sink and on the bench top. Credit: Ali Chase

A couple of days ago a storm system passed over us, and the winds came up to about 30 knots. With winds that high, waves crash onto the deck and it is unsafe to deploy instruments over the side of the ship, so our work was put on hold for a day. I spent some time on the bridge (where the ship’s captain and crew navigate from) and watched the bow of Endeavor ride the waves like a roller coaster. Every now and then the bow came down against a big wave and an impressive spray of ocean water was sent flying, with water reaching as far as the windshield of the bridge where we were watching!

The ship crashes into a large wave during high seas. Credit: Ali Chase

The ship crashes into a large wave during high seas. Credit: Ali Chase

To document our work and life on board we have been putting GoPro cameras on everything, including hard hats and instruments that are deployed over the side of the ship. Recently a GoPro went for a ride on the “Polarimeter”, an instrument that measures the polarization state of light, which Robert mentioned in the previous blog post. While the GoPro was underwater, a big group of dolphins came to say hi, and the GoPro caught it on camera – very cool! We also lowered Styrofoam cups down with the CTD to a depth of 1,000 meters, where the pressure compresses them, along with any writing or pictures that have been drawn on. We sent down a bunch of cups from a school group that had visited the University of Maine’s Darling Marine Center, and we added a few that we decorated ourselves for souvenirs to bring home.

Left: A selfie I took while wearing the GoPro on my hardhat. Credit: Ali Chase; Right: Dolphins near the Polarimeter deployed with a GoPro attached. Credit: Wayne Slade

Left: A selfie I took while wearing the GoPro on my hardhat. Credit: Ali Chase; Right: Dolphins near the Polarimeter deployed with a GoPro attached. Credit: Wayne Slade

 

Styrofoam cups that were attached to the CTD and lowered to 1,000 meters, where the pressure compresses them (top = before, bottom = after; box of tea shown for scale). Credit: Ali Chase

Styrofoam cups that were attached to the CTD and lowered to 1,000 meters, where the pressure compresses them (top = before, bottom = after; box of tea shown for scale). Credit: Ali Chase

I feel very fortunate to be included in this adventure at sea with such a great group of scientists and crew. I am constantly learning about the ocean and how we understand it as oceanographers, as well as all of the techniques and logistics that go into the collection of quality data. It is certainly humbling to be out on the ocean with nothing but blue all around, and I am reminded of why I am drawn to this field of study and how much of our planet is covered in this blue expanse. Thank you for taking the time to read our blog and I hope you’ve enjoyed this glimpse into our life and work at sea!

Ali Chase is a graduate student in oceanography at the University of Maine’s School of Marine Sciences.

Notes from the Field